SNP Profiles of TSH 516   View Data

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 Key

 1234567891011121314
_Input profile
CTACCTCCTTAAACCTAGGGAATTAAAA
1._RUQ_1018
______AC___AA___
2._TSH_516
______AC___AA___
3._RUQ_1018
______AC___AA__AA
4._TSH_516
______AC___AA___
5._TSH_516
______AC___AA___
6._TSH_516
______AC___AA___
7._TSH_516
______AC___AA___
8._TSH_516
______AC___AA___
9._TSH_516
______AC___AA___
10._TSH_516
______AC___AA___
11._TSH_516
______AC___AA___
12._TSH_516
______AC___AA___
13._TSH_516
______AC___AA___
14._TSH_516
______AC___AA___
15._TSH_516
______AC___AA___
16._TSH_516
______AC___AA___
17._GC-08-209-6-05
______AC___AA__AA
18._GC-08-208-6-04
______AC___AA__AA
19._GC-08-208-6-04
______AC___AA__AA
20._GC-08-208-6-04
______AC___AA__AA
21._GC-08-208-6-04
______AC___AA__AA
22._GC-08-208-6-04
______AC___AA__AA
23._GC-08-208-6-04
______AC___AA__AA
24._GC-08-209-6-05
______AC___AA__AA
25._GC-08-209-6-05
______AC___AA__AA
26._GC-08-209-6-05
______AC___AA__AA
27._GC-08-209-6-05
______AC___AA__AA
28._GC-08-209-6-05
______AC___AA__AA
29._GC-08-209-6-05
______AC___AA__AA
30._GC-08-208-6-04
______AC___AA__AG
31._TSH_516
______AC___AG___
32._GC-08-209-6-05
______AC___AG__AG
33._RUQ_1018
______AC___AA__AA
 1516171819202122232425262728
_Input profile
ACCTACCTAAAACGAAACCCTTAGCGGG
1._RUQ_1018
____AC_CG_AC____GG
2._TSH_516
____AC_CG_______
3._RUQ_1018
____AC_GG_ACCC____
4._TSH_516
____AC_CG_AC____AG
5._TSH_516
____AC_CG_AC____AG
6._TSH_516
____AC_CG_AC____AG
7._TSH_516
____AC_CG_AC____AG
8._TSH_516
____AC_CG_AC____AG
9._TSH_516
____AC_CG_AC____AG
10._TSH_516
____AC_CG_AC____AG
11._TSH_516
____AC_CG_AC____AG
12._TSH_516
____AC_CG_AC____AG
13._TSH_516
____AC_CG_AC____AG
14._TSH_516
____AC_CG_AC____AG
15._TSH_516
____AC_CG_AC____AG
16._TSH_516
____AC_CG_AC____AG
17._GC-08-209-6-05
____AC_CG_ACCC___AG
18._GC-08-208-6-04
____AC_CG_ACCC___AG
19._GC-08-208-6-04
____AC_CG_ACCC___AG
20._GC-08-208-6-04
____AC_CG_ACCC___AG
21._GC-08-208-6-04
____AC_CG_ACCC___AG
22._GC-08-208-6-04
____AC_CG_ACCC___AG
23._GC-08-208-6-04
____AC_CG_ACCC___AG
24._GC-08-209-6-05
____AC_CG_ACCC___AG
25._GC-08-209-6-05
____AC_CG_ACCC___AG
26._GC-08-209-6-05
____AC_CG_ACCC___AG
27._GC-08-209-6-05
____AC_CG_ACCC___AG
28._GC-08-209-6-05
____AC_CG_ACCC___AG
29._GC-08-209-6-05
____AC_CG_ACCC___AG
30._GC-08-208-6-04
____AC_CG__CC____
31._TSH_516
____AA_CC_AC____AA
32._GC-08-209-6-05
____AA_CC_ACCC___AA
33._RUQ_1018
____AC_CG_ACGG____
 2930313233343536373839404142
_Input profile
CCCTGTAGCCCTACATCTCGAGCGAGCT
1._RUQ_1018
__GT______CG__AG_
2._TSH_516
__GT______CG__AG_
3._RUQ_1018
_CTGTAG__AC__CG-_AG-
4._TSH_516
__GT______CG__AG_
5._TSH_516
__GT______CG__AG_
6._TSH_516
__GT______CG__AG_
7._TSH_516
__GT______CG__AG_
8._TSH_516
__GT______CG__AG_
9._TSH_516
__GT______CG__AG_
10._TSH_516
__GT______CG__AG_
11._TSH_516
__GT______CG__AG_
12._TSH_516
__GT______CG__AG_
13._TSH_516
__GT______CG__AG_
14._TSH_516
__GT______CG__AG_
15._TSH_516
__GT______CG__AG_
16._TSH_516
__GT______CG__AG_
17._GC-08-209-6-05
_CTGTAG__AC_CGCGAG_AGCT
18._GC-08-208-6-04
_CTGTAG__AC_CGCGAG_AGCT
19._GC-08-208-6-04
_CTGTAG__AC_CGCGAG_AGCT
20._GC-08-208-6-04
_CTGTAG__AC_CGCGAG_AGCT
21._GC-08-208-6-04
_CTGTAG__AC_CGCGAG_AGCT
22._GC-08-208-6-04
_CTGTAG__AC_CGCGAG_AGCT
23._GC-08-208-6-04
_CTGTAG__AC_CGCGAG_AGCT
24._GC-08-209-6-05
_CTGTAG__AC_CGCGAG_AGCT
25._GC-08-209-6-05
_CTGTAG__AC_CGCGAG_AGCT
26._GC-08-209-6-05
_CTGTAG__AC_CGCGAG_AGCT
27._GC-08-209-6-05
_CTGTAG__AC_CGCGAG_AGCT
28._GC-08-209-6-05
_CTGTAG__AC_CGCGAG_AGCT
29._GC-08-209-6-05
_CTGTAG__AC_CGCGAG_AGCT
30._GC-08-208-6-04
_CTGT___AC_CGCGAG_AGCT
31._TSH_516
__GT______CG__AG_
32._GC-08-209-6-05
_CTGTAA__AC_CGCGAG_AGCC
33._RUQ_1018
__ACAG__AC_CGCGAG_AG_
 4344454647484950515253545556
_Input profile
CTATCTAGCTCTGTAACCGTGTTTAGAG
1._RUQ_1018
___AG_CT___GT____
2._TSH_516
___AG_CT___GT____
3._RUQ_1018
_________GT____
4._TSH_516
___AG_CT___GT____
5._TSH_516
___AG_CT___GT____
6._TSH_516
___AG_CT___GT____
7._TSH_516
___AG_CT___GT____
8._TSH_516
___AG_CT___GT____
9._TSH_516
___AG_CT___GT____
10._TSH_516
___AG_CT___GT____
11._TSH_516
___AG_CT___GT____
12._TSH_516
___AG_CT___GT____
13._TSH_516
___AG_CT___GT____
14._TSH_516
___AG_CT___GT____
15._TSH_516
___AG_CT___GT____
16._TSH_516
___AG_CT___GT____
17._GC-08-209-6-05
___AG_CT___GT____
18._GC-08-208-6-04
___AG_CT___GT____
19._GC-08-208-6-04
___AG_CT___GT____
20._GC-08-208-6-04
___AG_CT___GT____
21._GC-08-208-6-04
___AG_CT___GT____
22._GC-08-208-6-04
___AG_CT___GT____
23._GC-08-208-6-04
___AG_CT___GT____
24._GC-08-209-6-05
___AG_CT___GT____
25._GC-08-209-6-05
___AG_CT___GT____
26._GC-08-209-6-05
___AG_CT___GT____
27._GC-08-209-6-05
___AG_CT___GT____
28._GC-08-209-6-05
___AG_CT___GT____
29._GC-08-209-6-05
___AG_CT___GT____
30._GC-08-208-6-04
___AG_CT___GT____
31._TSH_516
___AG_CT___GT____
32._GC-08-209-6-05
___AG_CT___GT____
33._RUQ_1018
___AG_____AC____
 575859           
_Input profile
CGTTAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1018
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._TSH_516
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RUQ_1018
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._TSH_516
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._TSH_516
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._TSH_516
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._TSH_516
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._TSH_516
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._TSH_516
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._TSH_516
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._TSH_516
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._TSH_516
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._TSH_516
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._TSH_516
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._TSH_516
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._TSH_516
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-08-209-6-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-08-208-6-04
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-08-208-6-04
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-08-208-6-04
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-08-208-6-04
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-08-208-6-04
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-08-208-6-04
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-08-209-6-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-08-209-6-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-08-209-6-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-08-209-6-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-08-209-6-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-08-209-6-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GC-08-208-6-04
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._TSH_516
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._GC-08-209-6-05
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._RUQ_1018
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: TSH_516 RUQ_1018

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._TSH_516 RUQ_1018

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._TSH_516

95.5 %
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 7
 Dapeng Zhang, 2016

3._TSH_516 RUQ_1018

93.3 %
15 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._TSH_516

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 10
 Dapeng Zhang, 2016

5._TSH_516

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 9
 Dapeng Zhang, 2016

6._TSH_516

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 7
 Dapeng Zhang, 2016

7._TSH_516

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 6
 Dapeng Zhang, 2016

8._TSH_516

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 3
 Dapeng Zhang, 2016

9._TSH_516

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 2
 Dapeng Zhang, 2016

10._TSH_516

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 1
 Dapeng Zhang, 2016

11._TSH_516

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 4 > FP
 Dapeng Zhang, 2016

12._TSH_516

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 3 > FP
 Dapeng Zhang, 2016

13._TSH_516

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 9
 Dapeng Zhang, 2016

14._TSH_516

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 8
 Dapeng Zhang, 2016

15._TSH_516

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 2
 Dapeng Zhang, 2016

16._TSH_516

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._TSH_516 GC-08-209-6-05

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

18._TSH_516 GC-08-208-6-04

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

19._TSH_516 GC-08-208-6-04

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

20._TSH_516 GC-08-208-6-04

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

21._TSH_516 GC-08-208-6-04

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

22._TSH_516 GC-08-208-6-04

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

23._TSH_516 GC-08-208-6-04

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

24._TSH_516 GC-08-209-6-05

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._TSH_516 GC-08-209-6-05

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

26._TSH_516 GC-08-209-6-05

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

27._TSH_516 GC-08-209-6-05

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

28._TSH_516 GC-08-209-6-05

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

29._TSH_516 GC-08-209-6-05

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

30._TSH_516 GC-08-208-6-04

88.9 %
18 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

31._TSH_516

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 5
 Dapeng Zhang, 2016

32._TSH_516 GC-08-209-6-05

78.6 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

33._TSH_516 RUQ_1018

73.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP131
6TcSNP143 7TcSNP144 8TcSNP176 9TcSNP189 10TcSNP194
11TcSNP230 12TcSNP290 13TcSNP305 14TcSNP329 15TcSNP363
16TcSNP421 17TcSNP519 18TcSNP522 19TcSNP529 20TcSNP546
21TcSNP577 22TcSNP589 23TcSNP591 24TcSNP602 25TcSNP640
26TcSNP642 27TcSNP644 28TcSNP645 29TcSNP660 30TcSNP702
31TcSNP723 32TcSNP731 33TcSNP739 34TcSNP800 35TcSNP823
36TcSNP835 37TcSNP836 38TcSNP872 39TcSNP899 40TcSNP945
41TcSNP998 42TcSNP999 43TcSNP1010 44TcSNP1019 45TcSNP1053
46TcSNP1062 47TcSNP1112 48TcSNP1144 49TcSNP1205 50TcSNP1230
51TcSNP1237 52TcSNP1253 53TcSNP1275 54TcSNP1293 55TcSNP1401
56TcSNP1404 57TcSNP1458 58TcSNP1524 59TcSNP1527